Bogaerts is out of the lineup for Wednesday's game against the Reds.
Bogaerts went 2-for-4 with a solo home run, a walk and two RBI in Sunday's win over the Blue Jays.
Bogaerts isn't in the Padres' lineup for Saturday's game against the Dodgers.
Manager Mike Shildt announced Friday that Bogaerts will move to second base this season while Ha-Seong Kim takes over at shortstop, Dennis Lin of The Athletic reports.
Padres manager Mike Shildt indicated last week that he could eventually discuss a possible position switch with Bogaerts, Kevin Acee of the San Diego Union-Tribune reports.
Bogaerts went 2-for-5 with a two-run home run in Tuesday's 2-0 victory over the Rockies.
Bogaerts is absent from the lineup Wednesday versus the Dodgers.
Bogaerts went 1-for-5 with a double and a stolen base in a loss to Houston on Saturday.
Bogaerts went 4-for-4 with a double, an RBI and a stolen base in Sunday's 4-0 win over San Francisco.
Bogaerts went 1-for-4 with a solo home run in Game 2 of a twin bill against the Diamondbacks on Saturday.